#include "us_convert.h"

Classes
class	Excludes
	Class to contain a list of scans to exclude from a data set for a single c/c/w combination. More...

class	TripleInfo
	Class that contains information about relevant cell/channel/wavelength combinations. More...

Public Types
enum	ioError { OK, CANTOPEN, DUP_RUNID, NOPERSON, NODATA, NODB, NOAUC, NOXML, BADXML, BADGUID, PARTIAL_XML, NOT_WRITTEN }
	Some status codes returned by the us_convert program. More...

Public Member Functions
	US_Convert (void)
	Generic constructor for the US_Convert class. This constructor establishes the dialog and its relationship to the parent dialog. More...

Static Public Member Functions
static void	readLegacyData (QString, QList< US_DataIO::BeckmanRawScan > &, QString &)
	Reads the legacy raw data from disk into the program. More...

static void	convertLegacyData (QList< US_DataIO::BeckmanRawScan > &, QVector< US_DataIO::RawData > &, QList< TripleInfo > &, QString, double)
	Converts legacy raw data into US3 data. This function will convert existing datapoints and cell/channel/wavelength combinations in the data. More...

static int	saveToDisk (QVector< US_DataIO::RawData * > &, QList< TripleInfo > &, QVector< Excludes > &, QString, QString, QString, bool)
	Writes the converted US3 data to disk. More...

static int	readUS3Disk (QString, QVector< US_DataIO::RawData > &, QList< TripleInfo > &, QString &)
	Reloads converted US3 data back into the program to sync up with the database. More...

static void	splitRAData (QVector< US_DataIO::RawData > &, QList< TripleInfo > &, int, QList< double > &)
	Splits existing raw converted data into multiple datasets. Also rearranges triples in the data accordingly. More...

Static Private Member Functions
static void	convert (QList< US_DataIO::BeckmanRawScan > &rawLegacyData, US_DataIO::RawData &newRawData, QString triple, QString runType, double tolerance)

static void	setTriples (QList< US_DataIO::BeckmanRawScan > &rawLegacyData, QList< TripleInfo > &triples, QString runType, double tolerance)

static void	setCcwTriples (QList< US_DataIO::BeckmanRawScan > &rawLegacyData, QList< TripleInfo > &triples, double tolerance)

static void	setCcrTriples (QList< US_DataIO::BeckmanRawScan > &rawLegacyData, QList< TripleInfo > &triples, double tolerance)

static void	setInterpolated (unsigned char *, int)

static US_DataIO::Scan	newScanSubset (US_DataIO::Scan &oldScan, QVector< double > &radii, double r_start, double r_end)

Detailed Description

This class provides the ability to convert raw data in the Beckman format to the file format used by US3.

Definition at line 12 of file us_convert.h.

Member Enumeration Documentation

enum US_Convert::ioError

Some status codes returned by the us_convert program.

Enumerator
OK	Ok, no error.
CANTOPEN	The file cannot be opened.
DUP_RUNID	The given run ID already exists.
NOPERSON	The person specified doesn't exist.
NODATA	There is no data to read or write.
NODB	Connection to database cannot be made.
NOAUC	AUC File cannot be opened.
NOXML	XML data has not been entered.
BADXML	XML not formed correctly.
BADGUID	GUID read in the XML was not found in the database.
PARTIAL_XML	XML data has not been entered for all c/c/w combos.
NOT_WRITTEN	Data was not written.

Definition at line 16 of file us_convert.h.

Constructor & Destructor Documentation

US_Convert::US_Convert ( void )

Generic constructor for the US_Convert class. This constructor establishes the dialog and its relationship to the parent dialog.

Definition at line 14 of file us_convert.cpp.

Member Function Documentation

void US_Convert::convert	(	QList< US_DataIO::BeckmanRawScan > &	rawLegacyData,
		US_DataIO::RawData &	newRawData,
		QString	triple,
		QString	runType,
		double	tolerance
	)

staticprivate

Definition at line 353 of file us_convert.cpp.

void US_Convert::convertLegacyData	(	QList< US_DataIO::BeckmanRawScan > &	rawLegacyData,
		QVector< US_DataIO::RawData > &	rawConvertedData,
		QList< TripleInfo > &	triples,
		QString	runType,
		double	tolerance
	)

static

Converts legacy raw data into US3 data. This function will convert existing datapoints and cell/channel/wavelength combinations in the data.

Parameters

rawLegacyData	A reference to a structure provided by the calling function that already contains the imported raw data.
rawConvertedData	A reference to a structure provided by the calling function that will be used to store the US3 raw converted data.
triples	A reference to a structure provided by the calling function that will be used to store all the different cell/channel/wavelength combinations found in the data.
runType	A reference to a variable that already contains the type of data ( "RA", "IP", "RI", "FI", "WA", or "WI"). This information will affect how the data is converted.
tolerance	How far apart the wavelength readings can be and still be considered part of the same cell/channel/wavelength.

Definition at line 123 of file us_convert.cpp.

US_DataIO::Scan US_Convert::newScanSubset	(	US_DataIO::Scan &	oldScan,
		QVector< double > &	radii,
		double	r_start,
		double	r_end
	)

staticprivate

Definition at line 708 of file us_convert.cpp.

void US_Convert::readLegacyData	(	QString	dir,
		QList< US_DataIO::BeckmanRawScan > &	rawLegacyData,
		QString &	runType
	)

static

Reads the legacy raw data from disk into the program.

Parameters

dir	The directory in which the program will look for the raw data files.
rawLegacyData	A reference to a structure provided by the calling function that will be used to store the imported raw data.
runType	A reference to a variable that will contain the type of data that is being read ( "RA", "IP", "RI", "FI", "WA", or "WI"). This determination already affects how some data is handled when read.

Definition at line 18 of file us_convert.cpp.

int US_Convert::readUS3Disk	(	QString	dir,
		QVector< US_DataIO::RawData > &	rawConvertedData,
		QList< TripleInfo > &	triples,
		QString &	runType
	)

static

Reloads converted US3 data back into the program to sync up with the database.

Parameters

dir	The directory that contains the auc files
rawConvertedData	A reference to a structure provided by the calling function that will be used to store the US3 raw converted data.
triples	A reference to a structure provided by the calling function that will be used to store all the different cell/channel/wavelength combinations found in the data.
runType	A reference to a variable that already contains the type of data ( "RA", "IP", "RI", "FI", "WA", or "WI"). This information will affect how the data is converted.

Returns: An ioError status code

Definition at line 293 of file us_convert.cpp.

int US_Convert::saveToDisk	(	QVector< US_DataIO::RawData * > &	rawConvertedData,
		QList< TripleInfo > &	triples,
		QVector< Excludes > &	allExcludes,
		QString	runType,
		QString	runID,
		QString	dirname,
		bool	saveGUIDs
	)

static

Writes the converted US3 data to disk.

Parameters

rawConvertedData	A reference to a structure provided by the calling function that already contains the US3 raw converted data.
triples	A reference to a structure provided by the calling function that already contains all the different cell/channel/wavelength combinations in the data.
allExcludes	A reference to a QVector of excluded scans for each c/c/w combination
runType	A reference to a variable that already contains the type of data ( "RA", "IP", "RI", "FI", "WA", or "WI"). This information will affect how the data is written.
runID	The run ID of the experiment.
dirname	Directory in which files are to be written.
saveGUIDs	Boolean value that indicates whether data has been saved to disk before and doesn't require new GUIDs

Returns: One of the ioError status codes, above

Definition at line 161 of file us_convert.cpp.

void US_Convert::setCcrTriples	(	QList< US_DataIO::BeckmanRawScan > &	rawLegacyData,
		QList< TripleInfo > &	triples,
		double	tolerance
	)

staticprivate

Definition at line 860 of file us_convert.cpp.

void US_Convert::setCcwTriples	(	QList< US_DataIO::BeckmanRawScan > &	rawLegacyData,
		QList< TripleInfo > &	triples,
		double	tolerance
	)

staticprivate

Definition at line 773 of file us_convert.cpp.

void US_Convert::setInterpolated	(	unsigned char *	bitmap,
		int	location
	)

staticprivate

Definition at line 955 of file us_convert.cpp.

void US_Convert::setTriples	(	QList< US_DataIO::BeckmanRawScan > &	rawLegacyData,
		QList< TripleInfo > &	triples,
		QString	runType,
		double	tolerance
	)

staticprivate

Definition at line 759 of file us_convert.cpp.

void US_Convert::splitRAData	(	QVector< US_DataIO::RawData > &	rawConvertedData,
		QList< TripleInfo > &	triples,
		int	currentTriple,
		QList< double > &	subsets
	)

static

Splits existing raw converted data into multiple datasets. Also rearranges triples in the data accordingly.

Parameters

rawConvertedData	A reference to a structure that contains the US3 raw converted data.
triples	A reference to a structure that contains the different cell/channel/wavelength combinations in the data.
currentTriple	The triple that will be split.
subsets	A list of radius limits that define where a dataset begins and ends.

Definition at line 612 of file us_convert.cpp.

The documentation for this class was generated from the following files:

Classes

Public Types

Public Member Functions

Static Public Member Functions

Static Private Member Functions

Detailed Description

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation