| _2dsa_master(void) | US_MPI_Analysis | private |
| _2dsa_worker(void) | US_MPI_Analysis | private |
| abort(const QString &, int=-1) | US_MPI_Analysis | private |
| ADATE enum value | US_MPI_Analysis | private |
| ADATESIZE enum value | US_MPI_Analysis | private |
| add_to_queue(Sa_Job &) | US_MPI_Analysis | private |
| align_gene(Gene &) | US_MPI_Analysis | private |
| alpha | US_MPI_Analysis | private |
| alpha_scan(void) | US_MPI_Analysis | private |
| analysis_type | US_MPI_Analysis | private |
| analysisDate | US_MPI_Analysis | private |
| apply_alpha(const double, QVector< double > *, QVector< double > *, const int, const int, const int, double &, double &) | US_MPI_Analysis | private |
| ATTR_D enum value | US_MPI_Analysis | private |
| ATTR_F enum value | US_MPI_Analysis | private |
| ATTR_K enum value | US_MPI_Analysis | private |
| ATTR_S enum value | US_MPI_Analysis | private |
| attr_type enum name | US_MPI_Analysis | private |
| ATTR_V enum value | US_MPI_Analysis | private |
| ATTR_W enum value | US_MPI_Analysis | private |
| attr_x | US_MPI_Analysis | private |
| attr_y | US_MPI_Analysis | private |
| attr_z | US_MPI_Analysis | private |
| base_sig | US_MPI_Analysis | private |
| best_dgenes | US_MPI_Analysis | private |
| best_fitness | US_MPI_Analysis | private |
| best_genes | US_MPI_Analysis | private |
| buckets | US_MPI_Analysis | private |
| build_component(US_Model::SimulationComponent &, US_Math2::SolutionData &, double, double) | US_MPI_Analysis | private |
| cache_result(Result &) | US_MPI_Analysis | private |
| cached_results | US_MPI_Analysis | private |
| calc_residuals(int, int, SIMULATION &) | US_MPI_Analysis | private |
| calc_residuals_dmga(int, int, SIMULATION &, DGene &) | US_MPI_Analysis | private |
| calculated_solutes | US_MPI_Analysis | private |
| calculated_zsolutes | US_MPI_Analysis | private |
| clean_mrecs(QVector< US_ModelRecord > &) | US_MPI_Analysis | private |
| cluster | US_MPI_Analysis | private |
| cm_files | US_MPI_Analysis | private |
| cns_flt | US_MPI_Analysis | private |
| concentration_threshold | US_MPI_Analysis | private |
| concentrations | US_MPI_Analysis | private |
| constraints | US_MPI_Analysis | private |
| count_calc_residuals | US_MPI_Analysis | private |
| count_datasets | US_MPI_Analysis | private |
| create_solutes(double, double, double, double, double, double) | US_MPI_Analysis | private |
| cross_dgene(DGene &, QList< DGene >) | US_MPI_Analysis | private |
| cross_gene(Gene &, QList< Gene >) | US_MPI_Analysis | private |
| crossover | US_MPI_Analysis | private |
| current_dataset | US_MPI_Analysis | private |
| data_sets | US_MPI_Analysis | private |
| datasets_to_process | US_MPI_Analysis | private |
| db_name | US_MPI_Analysis | private |
| dbg_level | US_MPI_Analysis | private |
| dbg_timing | US_MPI_Analysis | private |
| dgene | US_MPI_Analysis | private |
| dgene_from_marker(QVector< double > &, DGene &) | US_MPI_Analysis | private |
| dgene_key(DGene &) | US_MPI_Analysis | private |
| dgenes | US_MPI_Analysis | private |
| dgenes_to_marker(QVector< double > &, QList< DGene > &, const int, const int) | US_MPI_Analysis | private |
| dgmarker | US_MPI_Analysis | private |
| directory | US_MPI_Analysis | private |
| dmga_global_fit(void) | US_MPI_Analysis | private |
| dmga_master(void) | US_MPI_Analysis | private |
| dmga_master_loop(void) | US_MPI_Analysis | private |
| dmga_worker(void) | US_MPI_Analysis | private |
| dmga_worker_loop(void) | US_MPI_Analysis | private |
| do_astfem | US_MPI_Analysis | private |
| DONEITER enum value | US_MPI_Analysis | private |
| DONELAST enum value | US_MPI_Analysis | private |
| ds_calc_solutes | US_MPI_Analysis | private |
| ds_points | US_MPI_Analysis | private |
| ds_startx | US_MPI_Analysis | private |
| dset_calc_solutes | US_MPI_Analysis | private |
| dset_matrices(int, int, QVector< double > &, QVector< double > &) | US_MPI_Analysis | private |
| dump_buckets(void) | US_MPI_Analysis | private |
| dump_fitness(const QList< Fitness > &) | US_MPI_Analysis | private |
| dump_genes(int) | US_MPI_Analysis | private |
| e_random(void) | US_MPI_Analysis | private |
| elitism | US_MPI_Analysis | private |
| EMMIGRATE enum value | US_MPI_Analysis | private |
| fetch_attr_value(double &, US_Model &, US_dmGA_Constraints::AttribType &, int &) | US_MPI_Analysis | private |
| fill_pcsa_queue(void) | US_MPI_Analysis | private |
| fill_queue(void) | US_MPI_Analysis | private |
| filter_mrecs(const int, QVector< US_ModelRecord > &, QVector< US_ModelRecord > &) | US_MPI_Analysis | private |
| FINISHED enum value | US_MPI_Analysis | private |
| fitness | US_MPI_Analysis | private |
| fitness_count | US_MPI_Analysis | private |
| fitness_hits | US_MPI_Analysis | private |
| fitness_map | US_MPI_Analysis | private |
| g_redo_inc | US_MPI_Analysis | private |
| ga_global_fit(void) | US_MPI_Analysis | private |
| ga_master(void) | US_MPI_Analysis | private |
| ga_master_loop(void) | US_MPI_Analysis | private |
| ga_worker(void) | US_MPI_Analysis | private |
| ga_worker_loop(void) | US_MPI_Analysis | private |
| gcores_count | US_MPI_Analysis | private |
| GENE enum value | US_MPI_Analysis | private |
| Gene typedef | US_MPI_Analysis | private |
| GENERATION enum value | US_MPI_Analysis | private |
| generation | US_MPI_Analysis | private |
| generations | US_MPI_Analysis | private |
| genes | US_MPI_Analysis | private |
| get_fitness(const Gene &) | US_MPI_Analysis | private |
| get_fitness_dmga(DGene &) | US_MPI_Analysis | private |
| get_fitness_v(const US_Vector &) | US_MPI_Analysis | private |
| get_fitness_v_dmga(US_Vector &, US_Vector &) | US_MPI_Analysis | private |
| gl_nnls_a | US_MPI_Analysis | private |
| gl_nnls_b | US_MPI_Analysis | private |
| glob_runid | US_MPI_Analysis | private |
| global_fit(void) | US_MPI_Analysis | private |
| group_rank | US_MPI_Analysis | private |
| IMMIGRATE enum value | US_MPI_Analysis | private |
| in_gsm | US_MPI_Analysis | private |
| INIT enum value | US_MPI_Analysis | private |
| init_pcsa_solutes(void) | US_MPI_Analysis | private |
| init_solutes(void) | US_MPI_Analysis | private |
| is_composite_job | US_MPI_Analysis | private |
| is_global_fit | US_MPI_Analysis | private |
| iterate(void) | US_MPI_Analysis | private |
| iterate_pcsa(void) | US_MPI_Analysis | private |
| iterations | US_MPI_Analysis | private |
| job_queue | US_MPI_Analysis | private |
| k_grid | US_MPI_Analysis | private |
| lamm_gsm_df(const US_Vector &, US_Vector &) | US_MPI_Analysis | private |
| lamm_gsm_df_dmga(US_Vector &, US_Vector &, US_Vector &) | US_MPI_Analysis | private |
| LARGE | US_MPI_Analysis | privatestatic |
| lfvari | US_MPI_Analysis | private |
| limitBucket(Bucket &) | US_MPI_Analysis | private |
| ljob_solutes | US_MPI_Analysis | private |
| low_working_depth(void) | US_MPI_Analysis | private |
| marker_from_dgene(QVector< double > &, DGene &) | US_MPI_Analysis | private |
| marker_to_dgenes(QVector< double > &, QList< DGene > &, const int, const int) | US_MPI_Analysis | private |
| max_depth | US_MPI_Analysis | private |
| max_experiment_size | US_MPI_Analysis | private |
| max_iterations | US_MPI_Analysis | private |
| max_rss(void) | US_MPI_Analysis | private |
| max_walltime | US_MPI_Analysis | private |
| maxods | US_MPI_Analysis | private |
| maxrss | US_MPI_Analysis | private |
| mc_data | US_MPI_Analysis | private |
| mc_iteration | US_MPI_Analysis | private |
| mc_iterations | US_MPI_Analysis | private |
| meniscus_points | US_MPI_Analysis | private |
| meniscus_range | US_MPI_Analysis | private |
| meniscus_run | US_MPI_Analysis | private |
| meniscus_value | US_MPI_Analysis | private |
| meniscus_values | US_MPI_Analysis | private |
| mgroup_count | US_MPI_Analysis | private |
| migrate_count | US_MPI_Analysis | private |
| migrate_dgenes(void) | US_MPI_Analysis | private |
| migrate_genes(void) | US_MPI_Analysis | private |
| min_experiment_size | US_MPI_Analysis | privatestatic |
| min_variance_improvement | US_MPI_Analysis | privatestatic |
| minimize(Gene &, double) | US_MPI_Analysis | private |
| minimize_dmga(DGene &, double) | US_MPI_Analysis | private |
| minimize_opt | US_MPI_Analysis | private |
| model_from_dgene(US_Model &, DGene &dgene) | US_MPI_Analysis | private |
| model_type(const QString) | US_MPI_Analysis | private |
| modelGUID | US_MPI_Analysis | private |
| montecarlo_pcsa(void) | US_MPI_Analysis | private |
| mrec | US_MPI_Analysis | private |
| mrecs | US_MPI_Analysis | private |
| mutate_dgene(DGene &) | US_MPI_Analysis | private |
| mutate_gene(Gene &) | US_MPI_Analysis | private |
| mutate_k(US_Solute &, int) | US_MPI_Analysis | private |
| mutate_s(US_Solute &, int) | US_MPI_Analysis | private |
| mutate_sigma | US_MPI_Analysis | private |
| mutation | US_MPI_Analysis | private |
| my_communicator | US_MPI_Analysis | private |
| my_group | US_MPI_Analysis | private |
| my_rank | US_MPI_Analysis | private |
| my_workers | US_MPI_Analysis | private |
| nassocc | US_MPI_Analysis | private |
| ncompc | US_MPI_Analysis | private |
| new_dmga_gene(void) | US_MPI_Analysis | private |
| new_gene(void) | US_MPI_Analysis | private |
| nfloatc | US_MPI_Analysis | private |
| nfvari | US_MPI_Analysis | private |
| orig_solutes | US_MPI_Analysis | private |
| orig_zsolutes | US_MPI_Analysis | private |
| p_grid | US_MPI_Analysis | private |
| p_mutate_k | US_MPI_Analysis | private |
| p_mutate_s | US_MPI_Analysis | private |
| p_mutate_sk | US_MPI_Analysis | private |
| par_key_value(const QString, const QString) | US_MPI_Analysis | private |
| parameters | US_MPI_Analysis | private |
| pararry | US_MPI_Analysis | private |
| parse(const QString &) | US_MPI_Analysis | private |
| parse_dataset(QXmlStreamReader &, DATASET *) | US_MPI_Analysis | private |
| parse_files(QXmlStreamReader &, DATASET *) | US_MPI_Analysis | private |
| parse_job(QXmlStreamReader &) | US_MPI_Analysis | private |
| parse_solution(QXmlStreamReader &, DATASET *) | US_MPI_Analysis | private |
| pcsa_best_model(void) | US_MPI_Analysis | private |
| pcsa_master(void) | US_MPI_Analysis | private |
| pcsa_worker(void) | US_MPI_Analysis | private |
| plague | US_MPI_Analysis | private |
| pm_2dsa_cjmast(void) | US_MPI_Analysis | private |
| pm_2dsa_master(void) | US_MPI_Analysis | private |
| pm_cjobs_master(void) | US_MPI_Analysis | private |
| pm_cjobs_start(void) | US_MPI_Analysis | private |
| pm_cjobs_supervisor(void) | US_MPI_Analysis | private |
| pm_cjobs_worker(void) | US_MPI_Analysis | private |
| pm_dmga_cjmast(void) | US_MPI_Analysis | private |
| pm_dmga_master(void) | US_MPI_Analysis | private |
| pm_ga_cjmast(void) | US_MPI_Analysis | private |
| pm_ga_master(void) | US_MPI_Analysis | private |
| pm_pcsa_cjmast(void) | US_MPI_Analysis | private |
| pmasters_master(void) | US_MPI_Analysis | private |
| pmasters_start(void) | US_MPI_Analysis | private |
| pmasters_supervisor(void) | US_MPI_Analysis | private |
| pmasters_worker(void) | US_MPI_Analysis | private |
| PMGTag enum name | US_MPI_Analysis | private |
| population | US_MPI_Analysis | private |
| port | US_MPI_Analysis | private |
| previous_values | US_MPI_Analysis | private |
| proc_count | US_MPI_Analysis | private |
| process_pcsa_results(const int, const int *) | US_MPI_Analysis | private |
| process_pcsa_solutes(Result &) | US_MPI_Analysis | private |
| process_results(int, const int *) | US_MPI_Analysis | private |
| process_solutes(int &, int &, QVector< US_Solute > &) | US_MPI_Analysis | private |
| random_01(void) | US_MPI_Analysis | private |
| READY enum value | US_MPI_Analysis | private |
| ready_worker(void) | US_MPI_Analysis | private |
| regularization | US_MPI_Analysis | private |
| requestGUID | US_MPI_Analysis | private |
| requestID | US_MPI_Analysis | private |
| res_data | US_MPI_Analysis | private |
| s_grid | US_MPI_Analysis | private |
| scaled_data | US_MPI_Analysis | private |
| send_udp(const QString &) | US_MPI_Analysis | private |
| server | US_MPI_Analysis | private |
| set_comp_attrib(US_Model::SimulationComponent &, double, int) | US_MPI_Analysis | private |
| set_count | US_MPI_Analysis | private |
| set_dmga_gaussians(void) | US_MPI_Analysis | private |
| set_dmga_MonteCarlo(void) | US_MPI_Analysis | private |
| set_gaMonteCarlo(void) | US_MPI_Analysis | private |
| set_gaussians(void) | US_MPI_Analysis | private |
| set_meniscus(void) | US_MPI_Analysis | private |
| set_monteCarlo(void) | US_MPI_Analysis | private |
| shutdown_all(void) | US_MPI_Analysis | private |
| sigmas | US_MPI_Analysis | private |
| sim_data | US_MPI_Analysis | private |
| sim_data1 | US_MPI_Analysis | private |
| sim_values | US_MPI_Analysis | private |
| simulation_values | US_MPI_Analysis | private |
| socket | US_MPI_Analysis | private |
| solute_doubles | US_MPI_Analysis | privatestatic |
| solutes_from_gene(Gene &, int) | US_MPI_Analysis | private |
| start(void) | US_MPI_Analysis | slot |
| STARTITER enum value | US_MPI_Analysis | private |
| STARTLAST enum value | US_MPI_Analysis | private |
| startTime | US_MPI_Analysis | private |
| stats_output(int, int, int, QDateTime, QDateTime, QDateTime) | US_MPI_Analysis | private |
| store_attr_value(double &, US_Model &, US_dmGA_Constraints::AttribType &, int &) | US_MPI_Analysis | private |
| submit(Sa_Job &, int) | US_MPI_Analysis | private |
| submit_pcsa(Sa_Job &, int) | US_MPI_Analysis | private |
| submitTime | US_MPI_Analysis | private |
| task_params | US_MPI_Analysis | private |
| task_parse(const QString &) | US_MPI_Analysis | private |
| tikreg_pcsa(void) | US_MPI_Analysis | private |
| time_datasets_left(void) | US_MPI_Analysis | private |
| time_mc_iterations(void) | US_MPI_Analysis | private |
| total_points | US_MPI_Analysis | private |
| u_random(int=100) | US_MPI_Analysis | private |
| UDPMSG enum value | US_MPI_Analysis | private |
| UDPSIZE enum value | US_MPI_Analysis | private |
| UPDATE enum value | US_MPI_Analysis | private |
| update_fitness(int, US_Vector &) | US_MPI_Analysis | private |
| update_outputs(bool=false) | US_MPI_Analysis | private |
| US_MPI_Analysis(int, QStringList &) | US_MPI_Analysis | |
| vector_scaled_sum(US_Vector &, US_Vector &, double, US_Vector &, double=1.0) | US_MPI_Analysis | private |
| wksim_vals | US_MPI_Analysis | private |
| wmodel | US_MPI_Analysis | private |
| work_rss | US_MPI_Analysis | private |
| worker_depth | US_MPI_Analysis | private |
| worker_status | US_MPI_Analysis | private |
| WorkerStatus enum name | US_MPI_Analysis | private |
| WORKING enum value | US_MPI_Analysis | private |
| worknext | US_MPI_Analysis | private |
| write_global(void) | US_MPI_Analysis | private |
| write_model(const SIMULATION &, US_Model::AnalysisType, bool=false) | US_MPI_Analysis | private |
| write_mrecs(void) | US_MPI_Analysis | private |
| write_noise(US_Noise::NoiseType, const QVector< double > &) | US_MPI_Analysis | private |
| write_output(void) | US_MPI_Analysis | private |
| write_pcsa_aux_model(const int) | US_MPI_Analysis | private |
| zsolut_doubles | US_MPI_Analysis | privatestatic |
1.8.3.1-20130324